Details for gene set REGULATION_OF_TRANSCRIPTION_FROM_RNA_POLYMERASE_II

Table: GSEA Results Summary

Dataset	RNR_GSEA_DESEQ2_PVAL
Phenotype	NoPhenotypeAvailable
Upregulated in class	na_neg
GeneSet	REGULATION_OF_TRANSCRIPTION_FROM_RNA_POLYMERASE_II_PROMOTER
Enrichment Score (ES)	-0.102239534
Normalized Enrichment Score (NES)	-1.9801916
Nominal p-value	0.0020325202
FDR q-value	0.14280081
FWER p-Value	0.826

Table: GSEA details [plain text format]
	PROBE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	HOXC5	31	1.000	0.0019	No
2	GLIS3	69	0.999	0.0034	No
3	SNW1	142	0.995	0.0030	No
4	E2F1	426	0.976	-0.0089	No
5	EPC1	517	0.971	-0.0102	No
6	CREG1	583	0.968	-0.0102	No
7	IKZF3	739	0.960	-0.0151	No
8	SUPT3H	792	0.957	-0.0144	No
9	TCEB3	834	0.956	-0.0131	No
10	MNAT1	1100	0.941	-0.0240	No
11	HNF4A	1101	0.941	-0.0205	No
12	IL4	1315	0.929	-0.0285	No
13	DEK	1317	0.929	-0.0250	No
14	PBX1	1366	0.926	-0.0241	No
15	RBM14	1450	0.922	-0.0251	No
16	MDFI	1456	0.922	-0.0218	No
17	NEUROG1	1547	0.917	-0.0232	No
18	ABL1	1642	0.912	-0.0247	No
19	INHBA	1714	0.908	-0.0251	No
20	SMARCB1	1763	0.905	-0.0241	No
21	TCEB1	1783	0.904	-0.0216	No
22	GSC2	1786	0.904	-0.0182	No
23	MAML1	1792	0.904	-0.0149	No
24	TCF25	1805	0.903	-0.0120	No
25	ENO1	1908	0.898	-0.0140	No
26	CEBPG	2055	0.889	-0.0184	No
27	HTATSF1	2080	0.888	-0.0162	No
28	RUVBL1	2110	0.887	-0.0142	No
29	TRIM28	2141	0.885	-0.0123	No
30	BRD8	2187	0.883	-0.0112	No
31	HIF1A	2212	0.882	-0.0090	No
32	TFAP2C	2265	0.879	-0.0083	No
33	TCF15	2574	0.864	-0.0215	No
34	VHL	2666	0.858	-0.0229	No
35	SREBF2	2676	0.858	-0.0199	No
36	FST	2695	0.856	-0.0173	No
37	ZBTB32	2731	0.855	-0.0157	No
38	RUNX1	2744	0.854	-0.0128	No
39	SOX21	2807	0.851	-0.0126	No
40	FOXK2	2809	0.851	-0.0091	No
41	NFYC	3102	0.833	-0.0215	No
42	GLI2	3107	0.833	-0.0182	No
43	SUPT5H	3126	0.832	-0.0156	No
44	RNF4	3268	0.823	-0.0197	No
45	YY1	3293	0.822	-0.0175	No
46	TFCP2	3662	0.803	-0.0340	No
47	ERCC3	3723	0.799	-0.0337	No
48	MXD4	3804	0.795	-0.0345	No
49	POU4F2	3829	0.794	-0.0323	No
50	TCF19	3867	0.792	-0.0308	No
51	SNF8	3889	0.790	-0.0284	No
52	SRCAP	3908	0.789	-0.0258	No
53	SMARCD1	3975	0.786	-0.0259	No
54	FOXO1	4007	0.784	-0.0240	No
55	STAT2	4012	0.784	-0.0207	No
56	JUND	4090	0.779	-0.0213	No
57	ELL3	4120	0.778	-0.0194	No
58	SOX30	4138	0.776	-0.0167	No
59	IRF8	4179	0.774	-0.0154	No
60	TGIF1	4305	0.767	-0.0186	No
61	UBN1	4423	0.761	-0.0215	No
62	MTF1	4436	0.761	-0.0186	No
63	GFI1	4438	0.761	-0.0151	No
64	ELP4	4538	0.756	-0.0169	No
65	GATA1	4708	0.746	-0.0226	No
66	TRAK1	4741	0.745	-0.0208	No
67	ZNF593	4768	0.743	-0.0187	No
68	TCF7L2	4860	0.737	-0.0201	No
69	HMGB1	4994	0.729	-0.0238	No
70	NUFIP1	5075	0.725	-0.0246	No
71	HDAC8	5125	0.721	-0.0237	No
72	MED6	5255	0.713	-0.0272	No
73	ERF	5280	0.712	-0.0250	No
74	JAZF1	5287	0.711	-0.0217	No
75	FOSL1	5371	0.707	-0.0227	No
76	MYC	5458	0.703	-0.0239	No
77	CIAO1	5489	0.701	-0.0220	No
78	TRIM27	5623	0.695	-0.0257	No
79	UTF1	5665	0.693	-0.0243	No
80	SP2	5821	0.685	-0.0292	No
81	E2F6	5825	0.685	-0.0259	No
82	SUPT4H1	5858	0.683	-0.0241	No
83	LRRFIP1	5869	0.682	-0.0211	No
84	ATF6	5880	0.682	-0.0181	No
85	MYCN	5905	0.681	-0.0158	No
86	SNAI2	5944	0.678	-0.0143	No
87	TADA3	6021	0.674	-0.0149	No
88	ELF4	6026	0.674	-0.0116	No
89	TIAL1	6161	0.666	-0.0154	No
90	ELF2	6366	0.656	-0.0229	No
91	SMARCD3	6513	0.648	-0.0274	No
92	CCNH	6515	0.648	-0.0239	No
93	ELP3	6565	0.645	-0.0230	No
94	VPS72	6847	0.629	-0.0348	No
95	MEIS2	7123	0.613	-0.0462	No
96	NRIP1	7146	0.612	-0.0438	No
97	SMARCD2	7177	0.611	-0.0419	No
98	ZNF76	7353	0.602	-0.0479	No
99	HIRA	7788	0.581	-0.0680	No
100	MED26	7815	0.579	-0.0659	No
101	MYOD1	7898	0.573	-0.0668	No
102	SMAD2	8280	0.553	-0.0840	No
103	HEXIM1	8530	0.538	-0.0941	No
104	CHD4	8680	0.529	-0.0986	No
105	ZNF143	8747	0.526	-0.0987	Yes
106	NEUROD2	8749	0.526	-0.0952	Yes
107	DNMT1	8777	0.524	-0.0931	Yes
108	EID1	8787	0.524	-0.0901	Yes
109	NR0B2	8854	0.520	-0.0901	Yes
110	JUNB	8874	0.519	-0.0876	Yes
111	SMARCAL1	8886	0.518	-0.0847	Yes
112	POU2F3	8906	0.516	-0.0822	Yes
113	KLF10	8951	0.514	-0.0810	Yes
114	TBX3	8999	0.511	-0.0800	Yes
115	TWIST1	9004	0.511	-0.0767	Yes
116	TARBP1	9019	0.510	-0.0739	Yes
117	TBX19	9048	0.508	-0.0719	Yes
118	HNF4G	9120	0.504	-0.0722	Yes
119	TFAP2B	9136	0.503	-0.0695	Yes
120	FOXN1	9145	0.503	-0.0664	Yes
121	CITED1	9244	0.498	-0.0682	Yes
122	CLOCK	9262	0.497	-0.0656	Yes
123	MDM2	9381	0.491	-0.0684	Yes
124	TBX10	9459	0.487	-0.0691	Yes
125	KLF7	9460	0.487	-0.0655	Yes
126	ABCA2	9542	0.483	-0.0664	Yes
127	RNF14	9615	0.479	-0.0668	Yes
128	PPARD	9641	0.478	-0.0646	Yes
129	MED27	9672	0.475	-0.0627	Yes
130	SPI1	9674	0.475	-0.0592	Yes
131	CRTC1	9685	0.475	-0.0562	Yes
132	ELK1	9701	0.474	-0.0535	Yes
133	SUB1	9725	0.472	-0.0512	Yes
134	GLI1	9732	0.472	-0.0480	Yes
135	ZNF202	9767	0.470	-0.0463	Yes
136	FOXD3	9975	0.457	-0.0540	Yes
137	SQSTM1	10116	0.449	-0.0581	Yes
138	SPIB	10161	0.447	-0.0569	Yes
139	BRIP1	10240	0.442	-0.0576	Yes
140	CTCF	10246	0.442	-0.0544	Yes
141	PLAGL1	10301	0.439	-0.0538	Yes
142	HEXIM2	10325	0.438	-0.0515	Yes
143	TFAP2A	10331	0.438	-0.0482	Yes
144	IRF2	10490	0.429	-0.0533	Yes
145	PRPF6	10543	0.426	-0.0525	Yes
146	CITED2	10554	0.425	-0.0495	Yes
147	ID4	10573	0.424	-0.0470	Yes
148	MYF5	10575	0.424	-0.0435	Yes
149	PHF21A	10938	0.406	-0.0597	Yes
150	ERCC2	11075	0.398	-0.0635	Yes
151	BUD31	11076	0.398	-0.0600	Yes
152	FOSL2	11117	0.395	-0.0586	Yes
153	ZNF136	11124	0.395	-0.0554	Yes
154	NSD1	11126	0.395	-0.0519	Yes
155	UBP1	11200	0.391	-0.0523	Yes
156	PBX3	11253	0.388	-0.0516	Yes
157	MNX1	11268	0.387	-0.0489	Yes
158	SMAD3	11310	0.384	-0.0475	Yes
159	KLF11	11368	0.381	-0.0471	Yes
160	MAML3	11451	0.377	-0.0480	Yes
161	VEZF1	11474	0.376	-0.0457	Yes
162	CHD3	11532	0.372	-0.0452	Yes
163	SOX18	11706	0.363	-0.0511	Yes
164	ATF4	11751	0.359	-0.0500	Yes
165	GABPB2	11813	0.355	-0.0498	Yes
166	POU4F1	12001	0.344	-0.0564	Yes
167	PPARGC1B	12023	0.343	-0.0540	Yes
168	SP1	12049	0.342	-0.0518	Yes
169	BRD7	12150	0.336	-0.0537	Yes
170	MAML2	12167	0.335	-0.0510	Yes
171	ZNF177	12259	0.329	-0.0525	Yes
172	NCOA6	12367	0.323	-0.0547	Yes
173	ZNF148	12451	0.318	-0.0557	Yes
174	FOXH1	12545	0.313	-0.0572	Yes
175	GTF2H1	12595	0.310	-0.0564	Yes
176	MED12	12727	0.302	-0.0600	Yes
177	SOD2	12783	0.298	-0.0594	Yes
178	ATF5	12865	0.295	-0.0603	Yes
179	SMARCA2	12953	0.290	-0.0615	Yes
180	HSBP1	13021	0.285	-0.0616	Yes
181	RBBP8	13297	0.270	-0.0730	Yes
182	IRF7	13317	0.270	-0.0705	Yes
183	SMARCC1	13369	0.266	-0.0697	Yes
184	ZNF281	13418	0.264	-0.0688	Yes
185	ARNTL	13479	0.261	-0.0685	Yes
186	TAF6L	13570	0.256	-0.0699	Yes
187	MED20	13638	0.252	-0.0700	Yes
188	SMARCC2	13748	0.245	-0.0724	Yes
189	KAT2A	13838	0.240	-0.0737	Yes
190	ZMIZ2	13850	0.239	-0.0708	Yes
191	ZNF345	13923	0.235	-0.0711	Yes
192	NR2F2	13928	0.235	-0.0678	Yes
193	FOSB	13958	0.234	-0.0658	Yes
194	MDM4	13965	0.234	-0.0626	Yes
195	BLZF1	13990	0.232	-0.0604	Yes
196	RB1	13995	0.232	-0.0570	Yes
197	MED7	14179	0.222	-0.0635	Yes
198	NKX2-5	14238	0.219	-0.0631	Yes
199	DR1	14252	0.218	-0.0603	Yes
200	ELF1	14307	0.215	-0.0597	Yes
201	NFATC3	14395	0.210	-0.0608	Yes
202	SAP18	14411	0.209	-0.0581	Yes
203	TCEAL1	14473	0.205	-0.0579	Yes
204	KLF9	14508	0.204	-0.0562	Yes
205	HOXC6	14538	0.202	-0.0542	Yes
206	NRF1	14637	0.197	-0.0560	Yes
207	ZNF367	14675	0.195	-0.0545	Yes
208	CHD2	14728	0.192	-0.0538	Yes
209	DBP	14774	0.190	-0.0527	Yes
210	KLF12	14882	0.184	-0.0550	Yes
211	FOS	14902	0.183	-0.0525	Yes
212	GLIS1	14903	0.183	-0.0489	Yes
213	RYBP	14944	0.181	-0.0476	Yes
214	EPAS1	15004	0.177	-0.0472	Yes
215	DRAP1	15006	0.177	-0.0437	Yes
216	NR5A1	15028	0.176	-0.0413	Yes
217	ZBTB38	15044	0.174	-0.0386	Yes
218	CUX1	15049	0.174	-0.0353	Yes
219	MEN1	15085	0.172	-0.0336	Yes
220	CDK7	15156	0.169	-0.0339	Yes
221	HMGB2	15161	0.169	-0.0306	Yes
222	THRAP3	15324	0.161	-0.0359	Yes
223	BCL6	15367	0.159	-0.0346	Yes
224	HTATIP2	15399	0.157	-0.0327	Yes
225	SMARCE1	15484	0.152	-0.0338	Yes
226	MED17	15510	0.151	-0.0316	Yes
227	PAWR	15624	0.146	-0.0342	Yes
228	ELP2	15630	0.145	-0.0309	Yes
229	TNFRSF1A	15678	0.143	-0.0300	Yes
230	LITAF	15912	0.129	-0.0391	Yes
231	GFI1B	15930	0.128	-0.0365	Yes
232	TFDP1	15980	0.125	-0.0356	Yes
233	CHD1	15996	0.124	-0.0329	Yes
234	MED1	16008	0.123	-0.0299	Yes
235	ZNF157	16030	0.122	-0.0275	Yes
236	MED21	16043	0.121	-0.0246	Yes
237	PPARG	16180	0.115	-0.0285	Yes
238	BRCA1	16206	0.114	-0.0263	Yes
239	PRKAR1A	16210	0.113	-0.0229	Yes
240	CRK	16226	0.112	-0.0202	Yes
241	ZMYND11	16380	0.104	-0.0250	Yes
242	TFAP4	16418	0.102	-0.0235	Yes
243	TEAD4	16580	0.094	-0.0287	Yes
244	TP53	16593	0.093	-0.0258	Yes
245	TCF7	16633	0.091	-0.0244	Yes
246	ZNF189	16699	0.087	-0.0244	Yes
247	MKL2	16726	0.085	-0.0223	Yes
248	ZNF354A	16756	0.084	-0.0203	Yes
249	MYO6	16759	0.084	-0.0169	Yes
250	KCNIP3	16770	0.084	-0.0139	Yes
251	ATF7IP	16796	0.082	-0.0117	Yes
252	NFX1	16882	0.077	-0.0128	Yes
253	MYF6	16907	0.076	-0.0105	Yes
254	ORC2	16971	0.073	-0.0104	Yes
255	MED23	16989	0.072	-0.0078	Yes
256	IKBKAP	16998	0.072	-0.0047	Yes
257	ZNF254	17010	0.071	-0.0017	Yes
258	MED13	17029	0.070	0.0008	Yes
259	PBX4	17031	0.070	0.0043	Yes
260	ZNF174	17070	0.068	0.0058	Yes
261	BPTF	17081	0.067	0.0088	Yes
262	NFE2	17147	0.064	0.0088	Yes
263	SREBF1	17191	0.063	0.0100	Yes
264	MED14	17225	0.061	0.0118	Yes
265	JMY	17643	0.040	-0.0074	Yes
266	ZEB1	17724	0.036	-0.0082	Yes
267	FOXO3	17746	0.035	-0.0058	Yes
268	NPAS2	17819	0.032	-0.0062	Yes
269	TCF12	17916	0.028	-0.0079	Yes
270	TARBP2	17952	0.026	-0.0063	Yes
271	PRDM1	17956	0.026	-0.0029	Yes
272	MECP2	18066	0.020	-0.0053	Yes
273	SMARCA5	18120	0.017	-0.0046	Yes
274	SLA2	18127	0.017	-0.0014	Yes
275	BMP6	18181	0.015	-0.0007	Yes
276	SOX12	18223	0.013	0.0006	Yes
277	ZFPM2	18279	0.011	0.0011	Yes
278	STAT3	18284	0.011	0.0045	Yes
279	SP4	18335	0.009	0.0053	Yes
280	NR6A1	18353	0.008	0.0079	Yes
281	HCFC2	18523	0.002	0.0022	Yes
282	RXRA	18568	0.001	0.0034	Yes